Why make it so hard? Just remove the factory sub, mount a low profile amp under the passenger seat and tie into the signal wires that previously connected to the sub. The odds are good that you will need a GLI (Ground Loop Interrupter) to prevent the dreaded alternator whine. As far as which wire to use as plus and which as minus, you should determine that by using your ears. The correct answer will depend on where you mount your sub. Get everything in and listen for a day or two one way, then try the other for a day or two. It should be readily apparent that one way sounds better than the other.