I have a 2009 GT with 46k KMS. I am also noticing a lot of rust and corrosion on the exhaust piping. My 12 year old Odyssey didn't have as much. If it is a stainless exhaust system it sure isn't good quality steel. Could be a problem in the future.
Look at this as an opportunity to get an awesome aftermarket exhaust to give the CX-9 some music out the mufflers.