Pr5 Hatch Ajar

I just replaced my hatch this afternoon and found that after getting everything wired up that my car sees the hatch as open when closed. I am trying to figure out what part of the door sends the open closed signal.

Interestingly enough I have a viper anti-theft. If I open the door when the system is armed the viper sees the door opening and sets off my alarm.

Any Ideas?

Thanks
 
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