Chris, BUMMER!!
Welcome to the forum.
My advice is to look for that key until you find it! lol.
Do you have an actual key, or is it a smart fob... (do you have a button on your door handle? this means you have a smart fob)
If you have a smart fob, I think the dealer MAY be able to delete the other fob from the computer. But, I can't say for sure. May have to replace the engine computer to do that. Call dealer and ask if they can delete the fob from the computer. I am guessing all the CX-9's have fobs now and that they got rid of the switchblade keys.
By the way, if you only have one fob now, only the dealer can program a second. My advice is to buy 2 new fobs on eBay, have the dealer program one of them, and then program the third yourself. (If you have a total of 3 fobs, you can keep one if a lock box that way if you lose one or if one becomes broken, you only have to buy one more and program it yourself)
Always a good idea to have a total of 3 fobs.
Good luck Chris.